Basic Hi-C data pre-processing procedure using shell

The main procedures using Juicer are in here, but we need to write some linux codes to modify the data format that satisfy the one in Juicer. Of course, the best way is just to directly learn shell coding, but if you only need some comments, these codes below might... [Read More]
Tags: Hi-C

Submitting data to GEO with ftp

Recently, I submitted a dataset to GEO. It was a painful experience, since we only have “ftp” in the server, without “ncftp”, “lftp”, etc. I worked on it for two days, and finally sort out the correct procedure. This post is for keeping the record. [Read More]
Tags: General