Publications

Siqi Shen, Ye Zheng, Sündüz Keleş, scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data, Bioinformatics, 2022. * corresponding authors.

Johnson, K. D., Conn, D. J., Shishkova, E., Katsumura, K. R., Liu, P., Shen, S., … & Hsu, A. P. (2020). Constructing and deconstructing GATA2-regulated cell fate programs to establish developmental trajectories. Journal of Experimental Medicine, 217(11).

Ye Zheng*, Siqi Shen* and Sündüz Keleş. Normalization and De-noising of single-cell Hi-C Data with BandNorm and 3DVI. bioRxiv (2021). * contribute equally.